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Group Publications
59. Zhou, H.; Carpenter, T.; Fu, X.; Jin, B.; Ody, B.; Hassan, M. S.; Jacobs, S. E.; Cheung, J.; Nicholson, E. M.; Jones, S. K., Jr.; Turlington, M.; Zhao, B.; Lorenz, S.; Cropp, T. A.; Yin, J., Linkage-Specific Synthesis of Di-ubiquitin Probes Enabled by the Incorporation of Unnatural Amino Acid ThzK. ChemBioChem 2022, 23 (8), e202200133. https://www.ncbi.nlm.nih.gov/pubmed/35263494
58. Hou, Y.; Sun, X.; Gheinani, P. T.; Guan, X.; Sharma, S.; Zhou, Y.; Jin, C.; Yang, Z.; Naren, A. P.; Yin, J.; Denning, T. L.; Gewirtz, A. T.; Liu, Y.; Xie, Z.; Li, C., Epithelial SMYD5 Exaggerates IBD by Down-regulating Mitochondrial Functions via Post-Translational Control of PGC-1alpha Stability. Cell Mol Gastroenterol Hepatol 2022, 14 (2), 375-403. https://www.ncbi.nlm.nih.gov/pubmed/35643234.
57. Terrell, J. R.; Tang, S.; Faniyi, O. O.; Jeong, I. H.; Yin, J.; Nijampatnam, B.; Velu, S. E.; Wang, W.; Zhang, R.; Luo, M., Structural studies of antitumor compounds that target the RING domain of MDM2. Protein Sci 2022, 31 (8), e4367. https://www.ncbi.nlm.nih.gov/pubmed/35900024.
56. Wang, Y.; Fang, S.; Chen, G.; Ganti, R.; Chernova, T. A.; Zhou, L.; Duong, D.; Kiyokawa, H.; Li, M.; Zhao, B.; Shcherbik, N.; Chernoff, Y. O.; Yin, J., Regulation of the endocytosis and prion-chaperoning machineries by yeast E3 ubiquitin ligase Rsp5 as revealed by orthogonal ubiquitin transfer. Cell Chem Biol 2021, 28, 1283-1297. https://www.ncbi.nlm.nih.gov/pubmed/33667410.
55. Peng, K.; Liu, R.; Jia, C.; Wang, Y.; Jeong, G. H.; Zhou, L.; Hu, R.; Kiyokawa, H.; Yin, J.*; Zhao, B.*, Regulation of O-Linked N-Acetyl Glucosamine Transferase (OGT) through E6 Stimulation of the Ubiquitin Ligase Activity of E6AP. Int J Mol Sci 2021, 22 (19). *Corresponding authors. https://www.ncbi.nlm.nih.gov/pubmed/34638625.
54. Wang, Y.; Liu, R.; Liao, J.; Jiang, L.; Jeong, G. H.; Zhou, L.; Polite, M.; Duong, D.; Seyfried, N. T.; Wang, H.; Kiyokawa, H.; Yin, J., Orthogonal ubiquitin transfer reveals human papillomavirus E6 downregulates nuclear transport to disarm interferon-gamma dependent apoptosis of cervical cancer cells. FASEB J 2021, 35 (11), e21986. https://www.ncbi.nlm.nih.gov/pubmed/34662469.
53. Fu, X.; Gadi, M. R.; Wang, S.; Han, J.; Liu, D.; Chen, X.; Yin, J.*; Li, L.*, General Tolerance of Galactosyltransferases toward UDP-galactosamine Expands Their Synthetic Capability. Angew Chem Int Ed Engl 2021, 60 (51), 26555-26560. *Corresponding authors. https://www.ncbi.nlm.nih.gov/pubmed/34661966Yu, H.; Gadi, M. R.; Bai, Y.;
52. Zhang, L.; Li, L.; Yin, J.; Wang, P. G.; Chen, X., Chemoenzymatic Total Synthesis of GM3 Gangliosides Containing Different Sialic Acid Forms and Various Fatty Acyl Chains. J Org Chem 2021, 86 (13), 8672-8682. https://www.ncbi.nlm.nih.gov/pubmed/34152144.
51. Zhou, H.; Cheung, J. W.; Carpenter, T.; Jones, S. K., Jr.; Luong, N. H.; Tran, N. C.; Jacobs, S. E.; Galbada Liyanage, S. A.; Cropp, T. A.; Yin, J., Bioorganic & medicinal chemistry letters, Enhancing the incorporation of lysine derivatives into proteins with methylester forms of unnatural amino acids. 2020, 30, 126876. PubMed.
50. Zhao, B.; Tsai, Y. C.; Jin, B.; Wang, B.; Wang, Y.; Zhou, H.; Carpenter, T.; Weissman, A. M.; Yin, J., Pharmacol Rev, Protein Engineering in the Ubiquitin System: Tools for Discovery and Beyond. 2020, 72, 380-413. Pubmed.
49. Zhu, H.; Wang, S.; Liu, D.; Ding, L.; Chen, C.; Liu, Y.; Wu, Z.; Bollag, R.; Liu, K.; Alexander, W. M.; Yin, J.; Ma, C.; Li, L.; Wang, P. G., Identifying Sialylation Linkages at the Glycopeptide Level by Glycosyltransferase Labeling Assisted Mass Spectrometry (GLAMS). Anal Chem 2020, 92 (9), 6297-6303. https://www.ncbi.nlm.nih.gov/pubmed/32271005.
48. Sane, S.; Hafner, A.; Srinivasan, R.; Masood, D.; Slunecka, J. L.; Noldner, C. J.; Hanson, A. D.; Kruisselbrink, T.; Wang, X.; Wang, Y.; Yin, J.; Rezvani, K. Mol Oncol, UBXN2A enhances CHIP-mediated proteasomal degradation of oncoprotein mortalin-2 in cancer cells, 2018, 12, 1753. Pubmed.
47. Jin, B.; Wang, J.; Fang, S.; Liu, X.; Jiang, B.; Hofmann, K.; Yin, J.*; Zhao, B.* BioMed Research International Ubiquitin-mimicking peptides transfer differentiates by E1 and E2 enzymes, 2018, 6062520. *Corresponding authors. PubMed.
46. Bhuripanyo, K., Wang, Y., Liu, X., Zhou, L., Liu, R., Duong, D., Zhao, B., Bi, Y., Zhou, H., Chen, G., Seyfried, N. T., Chazin, W. J., Kiyokawa, H., and Yin, J. (2018) Identifying the substrate proteins of U-box E3s E4B and CHIP by orthogonal ubiquitin transfer, Sci Adv 4, e1701393. https://www.ncbi.nlm.nih.gov/pubmed/29326975
45. Wang, Y., Liu, X., Zhou, L., Duong, D., Bhuripanyo, K., Zhao, B., Zhou, H., Liu, R., Bi, Y., Kiyokawa, H., and Yin, J. (2017) Identifying the ubiquitination targets of E6AP by orthogonal ubiquitin transfer, Nat Commun 8, 2232. https://www.ncbi.nlm.nih.gov/pubmed/29263404
44. Liu, X., Sun, L., Gursel, D. B., Cheng, C., Rademaker, A. W., Khan, S., Yin, J., and Kiyokawa, H. (2017) Downregulation of the ubiquitin activating enzyme Uba6 promotes epithelial-mesenchymal transition of mammary epithelial cells, Oncotarget, , 87480-87493. https://www.ncbi.nlm.nih.gov/pubmed/29152096
43. Liu, X.†, Zhao, B.†, Sun, L., Bhuripanyo, K., Wang, Y., Bi, Y., Davuluri, R. V., Duong, D. M., Nanavati, D., Yin, J.*, and Kiyokawa, H*. (2017) Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes, Nat Commun 8, 14286. †Equal authorship, *Corresponding authors.
http://www.ncbi.nlm.nih.gov/pubmed/28134249
42. Zhang, K., Bhuripanyo, K., Wang, Y., and Yin, J. (2015) Coupling Binding to Catalysis: Using Yeast Cell Surface Display to Select Enzymatic Activities, Methods Mol Biol 1319, 245-260.
41. Zhao, B., Zhang, K., Bhuripanyo, K., Wang, Y., Zhou, H., Zhang, M., and Yin, J. (2015) Phage selection assisted by sfp phosphopantetheinyl transferase-catalyzed site-specific protein labeling, Methods Mol Biol 1266, 161-170.
40. Zhao, B., Villhauer, E. B., Bhuripanyo, K., Kiyokawa, H., Schindelin, H., and Yin, J. (2014) SUMO-Mimicking Peptides Inhibiting Protein SUMOylation, Chembiochem, 15, 2662-2666.
39. Zhao, B., Zhang, K., Villhauer, E. B., Bhuripanyo, K., Kiyokawa, H., Schindelin, H., and Yin, J. (2013) Phage display to identify nedd8-mimicking peptides as inhibitors of the nedd8 transfer cascade, ChemBiochem, 14, 1323-1330.
38. Zhao, B., Zhang, K., Bhuripanyo, K., Choi, C. H., Villhauer, E. B., Li, H., Zheng, N., Kiyokawa, H., Schindelin, H., and Yin, J. (2013) Profiling the cross reactivity of ubiquitin with the nedd8 activating enzyme by phage display, PLoS One 8, e70312.
37. Zhang, K., Lin, H., Bhuripanyo, K., Zhao, B., Zheng, N. & Yin, J. (2013). Engineering New Protein-Protein Interactions on the β-Propeller Fold by Yeast Cell Surface Display. ChemBioChem, 14, 426-30.
36. Zhang, K., Nelson, K. M., Bhuripanyo, K., Grimes, K. D., Zhao, B., Aldrich, C. C. & Yin, J. (2013). Engineering the substrate specificity of the DhbE adenylation domain by yeast cell surface display. Chem Biol, 20, 92-101. Previewed by Cacho, R. A. & Tang, Y. (2013). Bringing Protein Engineering and Natural Product Biosynthesis Together. Chem Biol, 20, 3-5.
35. Zhao, B., Bhuripanyo, K., Schneider, J., Zhang, K., Schindelin, H., Boone, D. & Yin, J. (2012). Specificity of the E1-E2-E3 Enzymatic Cascade for Ubiquitin C-terminal Sequences Identified by Phage Display. ACS Chem Biol, 7, 2027-35.
34. Zhao, B., Choi, C. H., Bhuripanyo, K., Villhauer, E., Zhang, K. & Yin, J. (2012). Inhibiting ubiquitin transfer through the E1-E2-E3 cascade by short peptides. Organic Letters 14, 5760-3.
33. Zhao, B., Bhuripanyo, K., Zhang, K., Kiyokawa, H., Schindelin, H. & Yin, J. (2012). Orthogonal Ubiquitin Transfer through Engineered E1-E2 Cascade for Protein Ubiquitination. Chem Biol, 19, 1265-77.
32. Sunbul, M., Emerson, N. & Yin, J. (2011). Enzyme-catalyzed substrate attachment to phage surfaces for the selection of catalytic activities. Chembiochem 12, 380-6.
31. Wegner, S. V., Arslan, H., Sunbul, M., Yin, J. & He, C. (2010). Dynamic copper(I) imaging in mammalian cells with a genetically encoded fluorescent copper(I) sensor. J Am Chem Soc 132, 2567-9.
30. Zhang, K., He, J., Yang, M., Yen, M. & Yin, J. (2009). Identifying natural product biosynthetic genes from a soil metagenome by using T7 phage selection. Chembiochem 10, 2599-606.
29. Sunbul, M., and Yin, J. (2009) Site Specific Protein Labeling by Enzymatic Posttransaltional Modification, Org. Biomol. Chem. 7, 3361-71.
28. Zou, Y., and Yin, J. (2009) Phosphopantetheinyl transferase catalyzed site-specific protein labeling with ADP conjugated chemical probes, J. Am. Chem. Soc. 131, 7548-7549.
27. Sunbul, M., Marshall, N. J., Zou, Y., Zhang, K. & Yin, J. (2009). Catalytic Turnover Based Phage Selection for Engineering the Substrate Specificity of Sfp Phosphopantetheinyl Transferase. J Mol Biol 387, 883-98.
26. Sunbul, M., Zhang, K., and Yin, J. (2009) Chapter 10 using phosphopantetheinyl transferases for enzyme posttranslational activation, site specific protein labeling and identification of natural product biosynthetic gene clusters from bacterial genomes, Methods Enzymol. 458, 255-275.
25. Sunbul, M., Yen, M., Zou, Y. & Yin, J. (2008). Enzyme Catalyzed Site-Specific Protein Labeling and Cell Imaging with Quantum Dots. Chem. Commun. 5927-9.
24. Zou, Y. & Yin, J. (2008). Alkyne Functionalized Chemical Probes for Assaying the Substrate Specificities of the Adenylation Domains in Nonribosomal Peptide Synthetases. ChemBioChem 9, 2804-10.
23. Zou, Y. & Yin, J. (2008). Cu-free Cycloaddition for Identifying Catalytic Active Adenylation Domains of Nonribosomal Peptide Synthetases by Phage Display. Bioorg. Med. Chem. Lett. 18, 5664-7.
22. Yen, M. & Yin, J. (2007) High-throughput profiling of posttranslational modification enzymes by phage display. Biotechniques 43, 31, 33, 35 passim.
21. Marshall, N. J., and Yin, J. (2007) Phosphopantetheinyl Transferase Catalyzed Protein Labeling and Molecular Imaging, in Chemical Probes and Tags (Miller, L. M., Ed.), Wiley-VCH, Weinheim.
20. Zhou, Z., Cironi, P., Lin, A. J., Xu, Y., Hrvatin, S., Golan, D. E., Silver, P., Walsh, C. T., and Yin, J. (2007) Genetically encoded short peptide tags for orthogonal protein labeling by Sfp and AcpS phosphopantetheinyl transferases. ACS Chem Biol, 2, 337-46.
59. Zhou, H.; Carpenter, T.; Fu, X.; Jin, B.; Ody, B.; Hassan, M. S.; Jacobs, S. E.; Cheung, J.; Nicholson, E. M.; Jones, S. K., Jr.; Turlington, M.; Zhao, B.; Lorenz, S.; Cropp, T. A.; Yin, J., Linkage-Specific Synthesis of Di-ubiquitin Probes Enabled by the Incorporation of Unnatural Amino Acid ThzK. ChemBioChem 2022, 23 (8), e202200133. https://www.ncbi.nlm.nih.gov/pubmed/35263494
58. Hou, Y.; Sun, X.; Gheinani, P. T.; Guan, X.; Sharma, S.; Zhou, Y.; Jin, C.; Yang, Z.; Naren, A. P.; Yin, J.; Denning, T. L.; Gewirtz, A. T.; Liu, Y.; Xie, Z.; Li, C., Epithelial SMYD5 Exaggerates IBD by Down-regulating Mitochondrial Functions via Post-Translational Control of PGC-1alpha Stability. Cell Mol Gastroenterol Hepatol 2022, 14 (2), 375-403. https://www.ncbi.nlm.nih.gov/pubmed/35643234.
57. Terrell, J. R.; Tang, S.; Faniyi, O. O.; Jeong, I. H.; Yin, J.; Nijampatnam, B.; Velu, S. E.; Wang, W.; Zhang, R.; Luo, M., Structural studies of antitumor compounds that target the RING domain of MDM2. Protein Sci 2022, 31 (8), e4367. https://www.ncbi.nlm.nih.gov/pubmed/35900024.
56. Wang, Y.; Fang, S.; Chen, G.; Ganti, R.; Chernova, T. A.; Zhou, L.; Duong, D.; Kiyokawa, H.; Li, M.; Zhao, B.; Shcherbik, N.; Chernoff, Y. O.; Yin, J., Regulation of the endocytosis and prion-chaperoning machineries by yeast E3 ubiquitin ligase Rsp5 as revealed by orthogonal ubiquitin transfer. Cell Chem Biol 2021, 28, 1283-1297. https://www.ncbi.nlm.nih.gov/pubmed/33667410.
55. Peng, K.; Liu, R.; Jia, C.; Wang, Y.; Jeong, G. H.; Zhou, L.; Hu, R.; Kiyokawa, H.; Yin, J.*; Zhao, B.*, Regulation of O-Linked N-Acetyl Glucosamine Transferase (OGT) through E6 Stimulation of the Ubiquitin Ligase Activity of E6AP. Int J Mol Sci 2021, 22 (19). *Corresponding authors. https://www.ncbi.nlm.nih.gov/pubmed/34638625.
54. Wang, Y.; Liu, R.; Liao, J.; Jiang, L.; Jeong, G. H.; Zhou, L.; Polite, M.; Duong, D.; Seyfried, N. T.; Wang, H.; Kiyokawa, H.; Yin, J., Orthogonal ubiquitin transfer reveals human papillomavirus E6 downregulates nuclear transport to disarm interferon-gamma dependent apoptosis of cervical cancer cells. FASEB J 2021, 35 (11), e21986. https://www.ncbi.nlm.nih.gov/pubmed/34662469.
53. Fu, X.; Gadi, M. R.; Wang, S.; Han, J.; Liu, D.; Chen, X.; Yin, J.*; Li, L.*, General Tolerance of Galactosyltransferases toward UDP-galactosamine Expands Their Synthetic Capability. Angew Chem Int Ed Engl 2021, 60 (51), 26555-26560. *Corresponding authors. https://www.ncbi.nlm.nih.gov/pubmed/34661966Yu, H.; Gadi, M. R.; Bai, Y.;
52. Zhang, L.; Li, L.; Yin, J.; Wang, P. G.; Chen, X., Chemoenzymatic Total Synthesis of GM3 Gangliosides Containing Different Sialic Acid Forms and Various Fatty Acyl Chains. J Org Chem 2021, 86 (13), 8672-8682. https://www.ncbi.nlm.nih.gov/pubmed/34152144.
51. Zhou, H.; Cheung, J. W.; Carpenter, T.; Jones, S. K., Jr.; Luong, N. H.; Tran, N. C.; Jacobs, S. E.; Galbada Liyanage, S. A.; Cropp, T. A.; Yin, J., Bioorganic & medicinal chemistry letters, Enhancing the incorporation of lysine derivatives into proteins with methylester forms of unnatural amino acids. 2020, 30, 126876. PubMed.
50. Zhao, B.; Tsai, Y. C.; Jin, B.; Wang, B.; Wang, Y.; Zhou, H.; Carpenter, T.; Weissman, A. M.; Yin, J., Pharmacol Rev, Protein Engineering in the Ubiquitin System: Tools for Discovery and Beyond. 2020, 72, 380-413. Pubmed.
49. Zhu, H.; Wang, S.; Liu, D.; Ding, L.; Chen, C.; Liu, Y.; Wu, Z.; Bollag, R.; Liu, K.; Alexander, W. M.; Yin, J.; Ma, C.; Li, L.; Wang, P. G., Identifying Sialylation Linkages at the Glycopeptide Level by Glycosyltransferase Labeling Assisted Mass Spectrometry (GLAMS). Anal Chem 2020, 92 (9), 6297-6303. https://www.ncbi.nlm.nih.gov/pubmed/32271005.
48. Sane, S.; Hafner, A.; Srinivasan, R.; Masood, D.; Slunecka, J. L.; Noldner, C. J.; Hanson, A. D.; Kruisselbrink, T.; Wang, X.; Wang, Y.; Yin, J.; Rezvani, K. Mol Oncol, UBXN2A enhances CHIP-mediated proteasomal degradation of oncoprotein mortalin-2 in cancer cells, 2018, 12, 1753. Pubmed.
47. Jin, B.; Wang, J.; Fang, S.; Liu, X.; Jiang, B.; Hofmann, K.; Yin, J.*; Zhao, B.* BioMed Research International Ubiquitin-mimicking peptides transfer differentiates by E1 and E2 enzymes, 2018, 6062520. *Corresponding authors. PubMed.
46. Bhuripanyo, K., Wang, Y., Liu, X., Zhou, L., Liu, R., Duong, D., Zhao, B., Bi, Y., Zhou, H., Chen, G., Seyfried, N. T., Chazin, W. J., Kiyokawa, H., and Yin, J. (2018) Identifying the substrate proteins of U-box E3s E4B and CHIP by orthogonal ubiquitin transfer, Sci Adv 4, e1701393. https://www.ncbi.nlm.nih.gov/pubmed/29326975
45. Wang, Y., Liu, X., Zhou, L., Duong, D., Bhuripanyo, K., Zhao, B., Zhou, H., Liu, R., Bi, Y., Kiyokawa, H., and Yin, J. (2017) Identifying the ubiquitination targets of E6AP by orthogonal ubiquitin transfer, Nat Commun 8, 2232. https://www.ncbi.nlm.nih.gov/pubmed/29263404
44. Liu, X., Sun, L., Gursel, D. B., Cheng, C., Rademaker, A. W., Khan, S., Yin, J., and Kiyokawa, H. (2017) Downregulation of the ubiquitin activating enzyme Uba6 promotes epithelial-mesenchymal transition of mammary epithelial cells, Oncotarget, , 87480-87493. https://www.ncbi.nlm.nih.gov/pubmed/29152096
43. Liu, X.†, Zhao, B.†, Sun, L., Bhuripanyo, K., Wang, Y., Bi, Y., Davuluri, R. V., Duong, D. M., Nanavati, D., Yin, J.*, and Kiyokawa, H*. (2017) Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes, Nat Commun 8, 14286. †Equal authorship, *Corresponding authors.
http://www.ncbi.nlm.nih.gov/pubmed/28134249
42. Zhang, K., Bhuripanyo, K., Wang, Y., and Yin, J. (2015) Coupling Binding to Catalysis: Using Yeast Cell Surface Display to Select Enzymatic Activities, Methods Mol Biol 1319, 245-260.
41. Zhao, B., Zhang, K., Bhuripanyo, K., Wang, Y., Zhou, H., Zhang, M., and Yin, J. (2015) Phage selection assisted by sfp phosphopantetheinyl transferase-catalyzed site-specific protein labeling, Methods Mol Biol 1266, 161-170.
40. Zhao, B., Villhauer, E. B., Bhuripanyo, K., Kiyokawa, H., Schindelin, H., and Yin, J. (2014) SUMO-Mimicking Peptides Inhibiting Protein SUMOylation, Chembiochem, 15, 2662-2666.
39. Zhao, B., Zhang, K., Villhauer, E. B., Bhuripanyo, K., Kiyokawa, H., Schindelin, H., and Yin, J. (2013) Phage display to identify nedd8-mimicking peptides as inhibitors of the nedd8 transfer cascade, ChemBiochem, 14, 1323-1330.
38. Zhao, B., Zhang, K., Bhuripanyo, K., Choi, C. H., Villhauer, E. B., Li, H., Zheng, N., Kiyokawa, H., Schindelin, H., and Yin, J. (2013) Profiling the cross reactivity of ubiquitin with the nedd8 activating enzyme by phage display, PLoS One 8, e70312.
37. Zhang, K., Lin, H., Bhuripanyo, K., Zhao, B., Zheng, N. & Yin, J. (2013). Engineering New Protein-Protein Interactions on the β-Propeller Fold by Yeast Cell Surface Display. ChemBioChem, 14, 426-30.
36. Zhang, K., Nelson, K. M., Bhuripanyo, K., Grimes, K. D., Zhao, B., Aldrich, C. C. & Yin, J. (2013). Engineering the substrate specificity of the DhbE adenylation domain by yeast cell surface display. Chem Biol, 20, 92-101. Previewed by Cacho, R. A. & Tang, Y. (2013). Bringing Protein Engineering and Natural Product Biosynthesis Together. Chem Biol, 20, 3-5.
35. Zhao, B., Bhuripanyo, K., Schneider, J., Zhang, K., Schindelin, H., Boone, D. & Yin, J. (2012). Specificity of the E1-E2-E3 Enzymatic Cascade for Ubiquitin C-terminal Sequences Identified by Phage Display. ACS Chem Biol, 7, 2027-35.
34. Zhao, B., Choi, C. H., Bhuripanyo, K., Villhauer, E., Zhang, K. & Yin, J. (2012). Inhibiting ubiquitin transfer through the E1-E2-E3 cascade by short peptides. Organic Letters 14, 5760-3.
33. Zhao, B., Bhuripanyo, K., Zhang, K., Kiyokawa, H., Schindelin, H. & Yin, J. (2012). Orthogonal Ubiquitin Transfer through Engineered E1-E2 Cascade for Protein Ubiquitination. Chem Biol, 19, 1265-77.
32. Sunbul, M., Emerson, N. & Yin, J. (2011). Enzyme-catalyzed substrate attachment to phage surfaces for the selection of catalytic activities. Chembiochem 12, 380-6.
31. Wegner, S. V., Arslan, H., Sunbul, M., Yin, J. & He, C. (2010). Dynamic copper(I) imaging in mammalian cells with a genetically encoded fluorescent copper(I) sensor. J Am Chem Soc 132, 2567-9.
30. Zhang, K., He, J., Yang, M., Yen, M. & Yin, J. (2009). Identifying natural product biosynthetic genes from a soil metagenome by using T7 phage selection. Chembiochem 10, 2599-606.
29. Sunbul, M., and Yin, J. (2009) Site Specific Protein Labeling by Enzymatic Posttransaltional Modification, Org. Biomol. Chem. 7, 3361-71.
28. Zou, Y., and Yin, J. (2009) Phosphopantetheinyl transferase catalyzed site-specific protein labeling with ADP conjugated chemical probes, J. Am. Chem. Soc. 131, 7548-7549.
27. Sunbul, M., Marshall, N. J., Zou, Y., Zhang, K. & Yin, J. (2009). Catalytic Turnover Based Phage Selection for Engineering the Substrate Specificity of Sfp Phosphopantetheinyl Transferase. J Mol Biol 387, 883-98.
26. Sunbul, M., Zhang, K., and Yin, J. (2009) Chapter 10 using phosphopantetheinyl transferases for enzyme posttranslational activation, site specific protein labeling and identification of natural product biosynthetic gene clusters from bacterial genomes, Methods Enzymol. 458, 255-275.
25. Sunbul, M., Yen, M., Zou, Y. & Yin, J. (2008). Enzyme Catalyzed Site-Specific Protein Labeling and Cell Imaging with Quantum Dots. Chem. Commun. 5927-9.
24. Zou, Y. & Yin, J. (2008). Alkyne Functionalized Chemical Probes for Assaying the Substrate Specificities of the Adenylation Domains in Nonribosomal Peptide Synthetases. ChemBioChem 9, 2804-10.
23. Zou, Y. & Yin, J. (2008). Cu-free Cycloaddition for Identifying Catalytic Active Adenylation Domains of Nonribosomal Peptide Synthetases by Phage Display. Bioorg. Med. Chem. Lett. 18, 5664-7.
22. Yen, M. & Yin, J. (2007) High-throughput profiling of posttranslational modification enzymes by phage display. Biotechniques 43, 31, 33, 35 passim.
21. Marshall, N. J., and Yin, J. (2007) Phosphopantetheinyl Transferase Catalyzed Protein Labeling and Molecular Imaging, in Chemical Probes and Tags (Miller, L. M., Ed.), Wiley-VCH, Weinheim.
20. Zhou, Z., Cironi, P., Lin, A. J., Xu, Y., Hrvatin, S., Golan, D. E., Silver, P., Walsh, C. T., and Yin, J. (2007) Genetically encoded short peptide tags for orthogonal protein labeling by Sfp and AcpS phosphopantetheinyl transferases. ACS Chem Biol, 2, 337-46.
Jun Yin's postdoctoral publications
19. Yin, J., Straight, P. D., Hrvatin, S., Dorrestein, P. C., Bumpus, S., Jao, C., Kelleher, N. L., Kolter, R., and Walsh, C. T. (2007) Genome-wide high throughput mining of natural product biosynthetic gene clusters by phage display. Chem Biol 14, 303-12. This paper was featured in Research Highlights in Nature Methods 4, 470-1 (2007).
18. Singh, G. M., Vaillancourt, F. H., Yin, J., and Walsh, C. T. (2007) Characterization of SyrC, an Aminoacyltransferase Shuttling Threonyl and Chlorothreonyl Residues in the Syringomycin Biosynthetic Assembly Line. Chem Biol 14, 31-40.
17. Yin, J., Lin, A. J., Golan, D. E. & Walsh, C. T. (2006). Site-specific protein labeling by Sfp phosphopantetheinyl transferase. Nature Protocols, 1, 280-5.
16. McLoughlin, S. M., Mazur, M. T., Miller, L. M., Yin, J., Liu, F., Walsh, C. T. & Kelleher, N. L. (2005). Chemoenzymatic approaches for streamlined detection of active site modifications on thiotemplate assembly lines using mass spectrometry. Biochemistry, 44, 14159-69.
15. Yin, J., Straight, P. D., McLoughlin, S. M., Zhou, Z., Lin, A. J., Golan, D. E., Kelleher, N. L., Kolter, R. & Walsh, C. T. (2005). Genetically encoded short peptide tag for versatile protein labeling by Sfp phosphopantetheinyl transferase. Proc Natl Acad Sci U S A 102, 15815-20.
14. Yin, J., Lin, A. J., Buckett, P. D., Wessling-Resnick, M., Golan, D. E. & Walsh, C. T. (2005). Single-cell FRET imaging of transferrin receptor trafficking dynamics by Sfp-catalyzed, site-specific protein labeling. Chem Biol 12, 999-1006. This paper was featured in a Previews article in Chem Biol 12, 954-956 (2005) and in Research Highlights in Nature Methods 2, 808 (2005).
13. Vaillancourt, F. H., Yin, J. & Walsh, C. T. (2005). SyrB2 in syringomycin E biosynthesis is a nonheme FeII α-ketoglutarate- and O2-dependent halogenase. Proc Natl Acad Sci U S A 102, 10111-6.
12. Venkateshrao, S., Yin, J., Jarzecki, A. A., Schultz, P. G. & Spiro, T. G. (2004). Porphyrin distortion during affinity maturation of a ferrochelatase antibody, monitored by Resonance Raman spectroscopy. J Am Chem Soc 126, 16361-7.
11. Yin. J., Liu, F., Schinke, M., Daly, C. & Walsh, C. T. (2004). Phagemid encoded small molecules for high throughput screening of chemical libraries. J Am Chem Soc 126, 13570-1.
10. Yin, J., Liu, F., Li, X. & Walsh, C. T. (2004). Labeling proteins with small molecules by site-specific posttranslational modification. J Am Chem Soc 126, 7754-5. This paper was featured in Science and Technology Concentrates in Chem & Eng News 82, [24] 31 (2004).
19. Yin, J., Straight, P. D., Hrvatin, S., Dorrestein, P. C., Bumpus, S., Jao, C., Kelleher, N. L., Kolter, R., and Walsh, C. T. (2007) Genome-wide high throughput mining of natural product biosynthetic gene clusters by phage display. Chem Biol 14, 303-12. This paper was featured in Research Highlights in Nature Methods 4, 470-1 (2007).
18. Singh, G. M., Vaillancourt, F. H., Yin, J., and Walsh, C. T. (2007) Characterization of SyrC, an Aminoacyltransferase Shuttling Threonyl and Chlorothreonyl Residues in the Syringomycin Biosynthetic Assembly Line. Chem Biol 14, 31-40.
17. Yin, J., Lin, A. J., Golan, D. E. & Walsh, C. T. (2006). Site-specific protein labeling by Sfp phosphopantetheinyl transferase. Nature Protocols, 1, 280-5.
16. McLoughlin, S. M., Mazur, M. T., Miller, L. M., Yin, J., Liu, F., Walsh, C. T. & Kelleher, N. L. (2005). Chemoenzymatic approaches for streamlined detection of active site modifications on thiotemplate assembly lines using mass spectrometry. Biochemistry, 44, 14159-69.
15. Yin, J., Straight, P. D., McLoughlin, S. M., Zhou, Z., Lin, A. J., Golan, D. E., Kelleher, N. L., Kolter, R. & Walsh, C. T. (2005). Genetically encoded short peptide tag for versatile protein labeling by Sfp phosphopantetheinyl transferase. Proc Natl Acad Sci U S A 102, 15815-20.
14. Yin, J., Lin, A. J., Buckett, P. D., Wessling-Resnick, M., Golan, D. E. & Walsh, C. T. (2005). Single-cell FRET imaging of transferrin receptor trafficking dynamics by Sfp-catalyzed, site-specific protein labeling. Chem Biol 12, 999-1006. This paper was featured in a Previews article in Chem Biol 12, 954-956 (2005) and in Research Highlights in Nature Methods 2, 808 (2005).
13. Vaillancourt, F. H., Yin, J. & Walsh, C. T. (2005). SyrB2 in syringomycin E biosynthesis is a nonheme FeII α-ketoglutarate- and O2-dependent halogenase. Proc Natl Acad Sci U S A 102, 10111-6.
12. Venkateshrao, S., Yin, J., Jarzecki, A. A., Schultz, P. G. & Spiro, T. G. (2004). Porphyrin distortion during affinity maturation of a ferrochelatase antibody, monitored by Resonance Raman spectroscopy. J Am Chem Soc 126, 16361-7.
11. Yin. J., Liu, F., Schinke, M., Daly, C. & Walsh, C. T. (2004). Phagemid encoded small molecules for high throughput screening of chemical libraries. J Am Chem Soc 126, 13570-1.
10. Yin, J., Liu, F., Li, X. & Walsh, C. T. (2004). Labeling proteins with small molecules by site-specific posttranslational modification. J Am Chem Soc 126, 7754-5. This paper was featured in Science and Technology Concentrates in Chem & Eng News 82, [24] 31 (2004).
Jun Yin's graduate and undergraduate publications
9. Yin, J., Mills, J. H. & Schultz, P. G. (2004). A catalysis-based selection for peroxidase antibodies with increased activity. J Am Chem Soc 126, 3006-7.
8. Jimenez, R., Salazar, G., Yin, J., Joo, T. & Romesberg, F. E. (2004). Protein dynamics and the immunological evolution of molecular recognition. Proc Natl Acad Sci USA 101, 3803-8.
7. Yin J. & Schultz P. G. (2004) Immunological evolution of antibody catalysis. In "Catalytic Antibodies" (Keinan, E. ed), Wiley-VCH, Weinheim, pp. 1-29.
6. Yin, J., Beuscher, A. E. t., Andryski, S. E., Stevens, R. C. & Schultz, P. G. (2003). Structural plasticity and the evolution of antibody affinity and specificity. J Mol Biol 330, 651-6. This paper was featured on the cover of the issue.
5. Yin, J., Andryski, S. E., Beuscher, A. E. t., Stevens, R. C. & Schultz, P. G. (2003). Structural evidence for substrate strain in antibody catalysis. Proc Natl Acad Sci U S A 100, 856-61.
4. Schultz, P. G., Yin, J. & Lerner, R. A. (2002). The chemistry of the antibody molecule. Angew Chem Int Ed Engl 41, 4427-37.
3. Yin, J., Mundorff, E. C., Yang, P. L., Wendt, K. U., Hanway, D., Stevens, R. C. & Schultz, P. G. (2001). A comparative analysis of the immunological evolution of antibody 28B4. Biochemistry 40, 10764-73.
2. Romesberg, F. E., Santarsiero, B. D., Spiller, B., Yin, J., Barnes, D., Schultz, P. G. & Stevens, R. C. (1998). Structural and kinetic evidence for strain in biological catalysis. Biochemistry 37, 14404-9.
1. Yin, J., Wang, B. H., Li, Z. F., Zhang Y. M., Zhou, X. H. & Gu, Z. N. (1996) Enthalpies of dissolution of C60 and C70 in o-xylene, toluene, and carbon disufide at temperatures from 293.15 K to 313.15 K. J Chem Thermodynamics 28, 1145-1151.
9. Yin, J., Mills, J. H. & Schultz, P. G. (2004). A catalysis-based selection for peroxidase antibodies with increased activity. J Am Chem Soc 126, 3006-7.
8. Jimenez, R., Salazar, G., Yin, J., Joo, T. & Romesberg, F. E. (2004). Protein dynamics and the immunological evolution of molecular recognition. Proc Natl Acad Sci USA 101, 3803-8.
7. Yin J. & Schultz P. G. (2004) Immunological evolution of antibody catalysis. In "Catalytic Antibodies" (Keinan, E. ed), Wiley-VCH, Weinheim, pp. 1-29.
6. Yin, J., Beuscher, A. E. t., Andryski, S. E., Stevens, R. C. & Schultz, P. G. (2003). Structural plasticity and the evolution of antibody affinity and specificity. J Mol Biol 330, 651-6. This paper was featured on the cover of the issue.
5. Yin, J., Andryski, S. E., Beuscher, A. E. t., Stevens, R. C. & Schultz, P. G. (2003). Structural evidence for substrate strain in antibody catalysis. Proc Natl Acad Sci U S A 100, 856-61.
4. Schultz, P. G., Yin, J. & Lerner, R. A. (2002). The chemistry of the antibody molecule. Angew Chem Int Ed Engl 41, 4427-37.
3. Yin, J., Mundorff, E. C., Yang, P. L., Wendt, K. U., Hanway, D., Stevens, R. C. & Schultz, P. G. (2001). A comparative analysis of the immunological evolution of antibody 28B4. Biochemistry 40, 10764-73.
2. Romesberg, F. E., Santarsiero, B. D., Spiller, B., Yin, J., Barnes, D., Schultz, P. G. & Stevens, R. C. (1998). Structural and kinetic evidence for strain in biological catalysis. Biochemistry 37, 14404-9.
1. Yin, J., Wang, B. H., Li, Z. F., Zhang Y. M., Zhou, X. H. & Gu, Z. N. (1996) Enthalpies of dissolution of C60 and C70 in o-xylene, toluene, and carbon disufide at temperatures from 293.15 K to 313.15 K. J Chem Thermodynamics 28, 1145-1151.